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Citing CMDGA
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Assay category
4
DNA binding
Assay
4
ChIP-seq
Project
4
AMP
RFA
4
AMP
Experiment status
4
released
Genome assembly (visualization)
4
GRCh38
4
hg19
Organism
4
Homo sapiens
Target of assay
3
histone
3
histone modification
3
transcription factor
narrow histone mark
1
RNA binding protein
1
broad histone mark
Biosample type
4
tissue
Organ
4
pancreas
Life stage
4
unknown
Available data
4
bam
4
bed bed3+
4
bigWig
4
fastq
Platform
2
Illumina Genome Analyzer IIx
2
Illumina HiSeq 2000
Run type
4
single-ended
Read length (nt)
13
36
4
49
4
51
1
50
Library made from
4
DNA
Date released
4
August, 2017
Lab
4
AMP-T2D consortium
Replication type
4
anisogenic
Audit category:
4
missing controlled_by
target.investigated_as!
narrow histone mark
Showing 4 of 4 results
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Experiment
TSTSR352275
released
Audit not_compliant
1
ChIP-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans male (38 years) and male (59 years) and male (70 years)
Target:
H3K4me1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR774103
released
Audit not_compliant
1
ChIP-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans male (38 years) and male (62 years) and male (63 years)
Target:
CTCF
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR003436
released
Audit not_compliant
1
ChIP-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans female (38 years) and male (38 years)
Target:
PDX1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR644140
released
Audit not_compliant
1
ChIP-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans male (34 years) and male (38 years)
Target:
FOXA2
Lab:
AMP-T2D consortium
Project:
AMP