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Schema
Citing CMDGA
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Assay category
3
3D chromatin structure
2
DNA accessibility
Assay
298
total RNA-seq
71
ChIP-seq
68
ATAC-seq
7
snATAC-seq
4
MeRIP-seq
4
pCHi-C
3
Hi-C
1
DNase-seq
1
FAIRE-seq
1
RRBS
Project
5
AMP
RFA
3
AMP
2
AMP2
Experiment status
5
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
tissue
Organ
5
pancreas
Life stage
3
adult
2
unknown
Available data
2
bam
2
bed narrowPeak
2
bedpe bed3+
2
bigBed narrowPeak
2
bigWig
2
fastq
2
hic
1
bedpe
Platform
1
Illumina Genome Analyzer
1
Illumina Genome Analyzer I
Run type
2
single-ended
Read length (nt)
1
20
1
35
Library made from
5
DNA
Date released
2
August, 2017
1
August, 2021
1
March, 2019
1
November, 2019
Lab
3
AMP-T2D consortium
2
Bing Ren, UCSD
Replication type
3
anisogenic
2
unreplicated
Showing 5 of 5 results
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Experiment
DSR942HZR
released
Hi-C
of islet of Langerhans
Homo sapiens
islet of Langerhans female adult (56 years) and female adult (59 years) and male adult (53 years)
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR951IJE
released
Hi-C
of islet of Langerhans
Homo sapiens
islet of Langerhans female adult (43 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR043623
released
Hi-C
of islet of Langerhans
Homo sapiens
islet of Langerhans female adult (56 years) and female adult (59 years) and male adult (53 years)
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
TSTSR121227
released
FAIRE-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans male (53 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR171380
released
DNase-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans
Lab:
AMP-T2D consortium
Project:
AMP