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Schema
Citing CMDGA
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Assay category
1
3D chromatin structure
1
DNA accessibility
1
DNA methylation
Assay
286
total RNA-seq
71
ChIP-seq
34
ATAC-seq
4
pCHi-C
1
DNase-seq
1
FAIRE-seq
1
Hi-C
1
RRBS
1
snATAC-seq
Project
3
AMP
RFA
3
AMP
Experiment status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
tissue
Organ
3
pancreas
Life stage
2
unknown
1
adult
Available data
1
bam
1
bed bedMethyl
1
bed narrowPeak
1
bedpe bed3+
1
bigBed bedMethyl
1
bigBed narrowPeak
1
bigWig
1
fastq
1
hic
Platform
1
Illumina Genome Analyzer
Run type
1
single-ended
Read length (nt)
1
20
Library made from
3
DNA
Date released
1
August, 2017
1
July, 2019
1
November, 2019
Lab
3
AMP-T2D consortium
2
Bing Ren, UCSD
Replication type
1
anisogenic
1
isogenic
1
unreplicated
Showing 3 of 3 results
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Experiment
DSR951IJE
released
Hi-C
of islet of Langerhans
Homo sapiens
islet of Langerhans female adult (43 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR210DNG
released
RRBS
of islet of Langerhans
Homo sapiens
islet of Langerhans male (53 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR171380
released
DNase-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans
Lab:
AMP-T2D consortium
Project:
AMP