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Citing CMDGA
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Assay category
1
DNA accessibility
1
DNA binding
DNA methylation
Assay
1
ChIP-seq
1
DNase-seq
Project
2
AMP
RFA
2
AMP
Experiment status
2
released
Genome assembly (visualization)
2
GRCh38
2
hg19
Organism
2
Homo sapiens
Target of assay
1
histone
1
histone modification
1
narrow histone mark
Biosample type
2
tissue
Organ
2
liver
Life stage
1
adult
1
embryonic
Available data
2
bam
2
bed narrowPeak
2
bigBed narrowPeak
2
bigWig
2
fastq
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Platform
51
Illumina HiSeq 2000
7
MiSeq
3
Illumina Genome Analyzer IIx
2
Applied Biosystems SOLiD System 3 Plus
2
Illumina Genome Analyzer
2
Illumina Genome Analyzer II
2
Illumina HiSeq 2500
1
Illumina HiSeq 4000
Run type
1
paired-ended
1
single-ended
Read length (nt)
2
36
Mapped read length (nt)
1
36
Library made from
2
DNA
Date released
1
August, 2017
1
November, 2018
Lab
2
AMP-T2D consortium
Replication type
1
anisogenic
1
unreplicated
Audit category:
1
inconsistent control read length
assay_slims!
DNA methylation
Showing 2 of 2 results
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Experiment
TSTSR004CBL
released
DNase-seq
of liver
Homo sapiens
liver embryo (59 days) and embryo (80 days)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR999552
released
Audit warning
1
ChIP-seq
of liver
Homo sapiens
liver male adult (32 years)
Target:
H3K4me3
Lab:
AMP-T2D consortium
Project:
AMP