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Schema
Citing CMDGA
Clear Filters
Assay category
2
DNA binding
1
DNA accessibility
1
DNA methylation
Assay
2
ChIP-seq
1
DNase-seq
1
RRBS
Project
4
AMP
RFA
4
AMP
Experiment status
4
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
4
Homo sapiens
Target of assay
1
control
1
histone
1
histone modification
1
narrow histone mark
Biosample type
4
tissue
Organ
4
liver
Life stage
2
adult
1
embryonic
1
unknown
Available data
4
fastq
3
bam
2
bed narrowPeak
2
bigBed narrowPeak
2
bigWig
1
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
Platform
1
Illumina Genome Analyzer II
1
Illumina Genome Analyzer IIx
1
Illumina HiSeq 2500
1
Illumina HiSeq 4000
Run type
3
single-ended
1
paired-ended
Read length (nt)
46
50
7
33
6
200
4
36
1
100
Mapped read length (nt)
1
36
Library made from
4
DNA
Date released
3
August, 2017
1
November, 2018
Lab
4
AMP-T2D consortium
Replication type
anisogenic
3
unreplicated
1
isogenic
Audit category:
1
inconsistent control read length
files.read_length!
100
replication_type!
anisogenic
Showing 4 of 4 results
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Experiment
TSTSR869ANN
released
DNase-seq
of liver
Homo sapiens
liver female embryo (113 days)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR190553
released
ChIP-seq
of liver
Homo sapiens
liver
Target:
Control
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR335337
released
RRBS
of liver
Homo sapiens
liver female adult (83 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR999552
released
Audit warning
1
ChIP-seq
of liver
Homo sapiens
liver male adult (32 years)
Target:
H3K4me3
Lab:
AMP-T2D consortium
Project:
AMP