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Schema
Citing CMDGA
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Assay category
3
Transcription
2
DNA binding
1
DNA accessibility
Assay
2
ChIP-seq
2
total RNA-seq
1
DNase-seq
1
pCHi-C
1
single cell RNA-seq
Project
7
AMP
RFA
7
AMP
Experiment status
7
released
Genome assembly (visualization)
4
GRCh38
4
hg19
Organism
7
Homo sapiens
Target of assay
transcription factor
2
control
1
RNA binding protein
Biosample type
7
tissue
Organ
7
liver
Life stage
3
adult
2
child
2
embryonic
2
unknown
Available data
5
bam
3
bigWig
3
fastq
3
tsv
2
bed bed3+
1
bed broadPeak
1
bed narrowPeak
1
bigBed broadPeak
1
bigBed narrowPeak
1
csv
Platform
1
Illumina Genome Analyzer
1
Illumina Genome Analyzer IIx
1
Illumina HiSeq 2000
1
Illumina HiSeq 2500
Run type
2
single-ended
1
paired-ended
Read length (nt)
2
36
1
32
Library made from
4
DNA
3
RNA
Date released
2
July, 2019
1
August, 2017
1
December, 2017
1
February, 2021
1
March, 2020
1
November, 2018
Lab
7
AMP-T2D consortium
Replication type
291
unreplicated
7
anisogenic
7
isogenic
target.investigated_as!
transcription factor
Showing 7 of 7 results
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Experiment
DSR534MRK
released
pCHi-C
of liver
Homo sapiens
liver
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR373SNC
released
single cell RNA-seq
of liver
Homo sapiens
liver female adult (41 year) and male adult (21 year) and male adult (26 years) and male adult (44 years) and male adult (65 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR525YKK
released
total RNA-seq
of liver
Homo sapiens
liver female embryo (20 weeks) and male embryo (22 weeks)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR485YUR
released
total RNA-seq
of liver
Homo sapiens
liver female child (6 years) and male adult (32 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR004CBL
released
DNase-seq
of liver
Homo sapiens
liver embryo (59 days) and embryo (80 days)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR485515
released
ChIP-seq
of liver
Homo sapiens
liver female child (6 years) and male adult (32 years)
Target:
rabbit-IgG-control
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR212220
released
ChIP-seq
of liver
Homo sapiens
liver
Target:
Control
Lab:
AMP-T2D consortium
Project:
AMP