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Citing CMDGA
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Assay category
3
DNA accessibility
Assay
13
ChIP-seq
7
total RNA-seq
4
WGBS
3
ATAC-seq
2
single cell RNA-seq
Project
2
HPAP
1
AMP
RFA
2
HPAP
1
AMP
Experiment status
3
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
3
Homo sapiens
Biosample type
3
primary cell
Organ
3
epithelium
3
pancreas
Life stage
adult
3
child
Available data
2
zippedFastqFolder
1
bam
1
bed narrowPeak
1
bigBed narrowPeak
1
bigWig
1
fastq
Platform
2
HiSeq HighOutput V4
1
Illumina HiSeq 2000
Run type
3
paired-ended
Read length (nt)
4
50
2
41
1
102
Library made from
3
DNA
Date released
2
May, 2022
1
September, 2018
Lab
2
Klaus Kaestner, Upenn
1
AMP-T2D consortium
Replication type
3
unreplicated
replicates.library.biosample.life_stage!
adult
files.read_length!
41
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Experiment
DSR826QVG
released
ATAC-seq
of pancreatic alpha cell
Homo sapiens
pancreatic alpha cell male child (13 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR529JQL
released
ATAC-seq
of pancreatic alpha cell
Homo sapiens
pancreatic alpha cell male child (3 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
TSTSR351IAS
released
ATAC-seq
of pancreatic alpha cell
Homo sapiens
pancreatic alpha cell male child (17 months)
Lab:
AMP-T2D consortium
Project:
AMP