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Schema
Citing CMDGA
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Assay category
2
DNA binding
1
3D chromatin structure
Assay
52
total RNA-seq
35
ATAC-seq
31
WGBS
12
single cell RNA-seq
2
ChIP-seq
1
Hi-C
Project
2
AMP
1
HPAP
RFA
2
AMP
1
HPAP
Experiment status
3
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
3
Homo sapiens
Target of assay
2
histone
2
histone modification
2
narrow histone mark
Biosample type
3
primary cell
Organ
3
epithelium
3
pancreas
Life stage
2
unknown
1
adult
Available data
2
bam
2
bed narrowPeak
2
bigWig
2
fastq
1
bedpe bed3+
1
cool
1
hic
Platform
2
Illumina Genome Analyzer IIx
Run type
2
single-ended
Read length (nt)
11
36
2
44
Library made from
3
DNA
Date released
2
August, 2017
1
October, 2022
Lab
2
AMP-T2D consortium
1
Klaus Kaestner, Upenn
Replication type
2
unreplicated
1
anisogenic
Audit category:
1
audit script error
Audit category:
2
inconsistent control read length
files.read_length!
36
Showing 3 of 3 results
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Experiment
DSR767WCG
released
Audit error
1
Hi-C
of pancreatic alpha cell
Homo sapiens
pancreatic alpha cell female adult (27 years) and female adult (58 years) and male adult (35 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
TSTSR978899
released
Audit warning
1
ChIP-seq
of pancreatic alpha cell
Homo sapiens
pancreatic alpha cell
Target:
H3K4me3
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR888854
released
Audit warning
1
ChIP-seq
of pancreatic alpha cell
Homo sapiens
pancreatic alpha cell
Target:
H3K4me3
Lab:
AMP-T2D consortium
Project:
AMP