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Citing CMDGA
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Assay category
3
DNA accessibility
Assay
13
ChIP-seq
3
ATAC-seq
2
WGBS
2
single cell RNA-seq
1
total RNA-seq
Project
2
AMP
1
HPAP
RFA
2
AMP
1
HPAP
Experiment status
3
released
Genome assembly (visualization)
2
GRCh38
2
hg19
Organism
3
Homo sapiens
Biosample type
3
primary cell
Organ
3
epithelium
3
pancreas
Life stage
adult
2
unknown
1
child
Available data
2
bam
2
bed narrowPeak
2
bigBed narrowPeak
2
bigWig
2
fastq
1
zippedFastqFolder
Platform
2
Illumina NextSeq 500
1
HiSeq HighOutput V4
Run type
3
paired-ended
Read length (nt)
3
50
2
41
Library made from
3
DNA
Date released
2
September, 2017
September, 2018
1
May, 2022
Lab
2
AMP-T2D consortium
1
Klaus Kaestner, Upenn
Replication type
3
unreplicated
month_released!
September, 2018
replicates.library.biosample.life_stage!
adult
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Experiment
DSR149NRO
released
ATAC-seq
of pancreatic beta cell
Homo sapiens
pancreatic beta cell male child (8 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
TSTSR331274
released
ATAC-seq
of pancreatic beta cell
Homo sapiens
pancreatic beta cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR928383
released
ATAC-seq
of pancreatic beta cell
Homo sapiens
pancreatic beta cell
Lab:
AMP-T2D consortium
Project:
AMP