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Citing CMDGA
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Assay category
5
DNA binding
Assay
5
ChIP-seq
1
GRO-seq
Project
6
AMP
RFA
6
AMP
Experiment status
6
released
Genome assembly (visualization)
4
GRCh38
4
hg19
1
hg18
Organism
6
Homo sapiens
Target of assay
3
transcription factor
1
control
1
histone
1
histone modification
1
narrow histone mark
Biosample type
6
in vitro differentiated cells
Organ
6
embryo
Life stage
13
embryonic
6
unknown
Available data
6
fastq
5
bam
5
bigWig
4
bed narrowPeak
Platform
6
Illumina HiSeq 2500
Run type
6
single-ended
Read length (nt)
4
50
2
36
Library made from
6
DNA
Date released
5
December, 2017
1
January, 2018
Lab
6
AMP-T2D consortium
Replication type
6
unreplicated
3
isogenic
Audit category:
missing controlled_by
Audit category:
1
inconsistent control read length
audit.NOT_COMPLIANT.category!
missing controlled_by
Showing 6 of 6 results
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Experiment
TSTSR171680
released
GRO-seq
of pancreatic endoderm
Homo sapiens
pancreatic endoderm
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR303983
released
ChIP-seq
of pancreatic endoderm
Homo sapiens
pancreatic endoderm
Target:
PDX1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR236798
released
ChIP-seq
of pancreatic endoderm
Homo sapiens
pancreatic endoderm
Target:
Control
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR522624
released
ChIP-seq
of pancreatic endoderm
Homo sapiens
pancreatic endoderm
Target:
H3K27ac
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR209943
released
Audit warning
1
ChIP-seq
of pancreatic endoderm
Homo sapiens
pancreatic endoderm
Target:
FOXA2
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR927554
released
ChIP-seq
of pancreatic endoderm
Homo sapiens
pancreatic endoderm
Target:
FOXA1
Lab:
AMP-T2D consortium
Project:
AMP