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Citing CMDGA
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Assay category
4
DNA binding
1
Transcription
Assay
4
ChIP-seq
1
GRO-seq
1
total RNA-seq
Project
6
AMP
RFA
6
AMP
Experiment status
6
released
Genome assembly (visualization)
4
GRCh38
4
hg19
1
hg18
Organism
6
Homo sapiens
Target of assay
2
transcription factor
1
broad histone mark
1
control
1
histone
1
histone modification
Biosample type
6
in vitro differentiated cells
Organ
6
embryo
Life stage
5
unknown
1
embryonic
Available data
6
fastq
5
bam
5
bigWig
3
bed narrowPeak
1
bed bed3+
1
tsv
Platform
5
Illumina HiSeq 2500
1
Illumina Genome Analyzer IIx
1
Illumina HiSeq 2000
Run type
6
single-ended
Read length (nt)
15
36
5
50
4
100
1
101
Library insert size (nt)
1
225-275
Library made from
5
DNA
1
RNA
Date released
4
December, 2017
1
February, 2018
1
January, 2018
Lab
6
AMP-T2D consortium
Replication type
5
unreplicated
1
isogenic
Audit category:
2
inconsistent control read length
Showing 6 of 6 results
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Experiment
TSTSR040023
released
total RNA-seq
of pancreatic endoderm
Homo sapiens
pancreatic endoderm
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR171680
released
GRO-seq
of pancreatic endoderm
Homo sapiens
pancreatic endoderm
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR303983
released
ChIP-seq
of pancreatic endoderm
Homo sapiens
pancreatic endoderm
Target:
PDX1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR236798
released
ChIP-seq
of pancreatic endoderm
Homo sapiens
pancreatic endoderm
Target:
Control
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR642129
released
Audit warning
1
ChIP-seq
of pancreatic endoderm
Homo sapiens
pancreatic endoderm
Target:
H3K4me1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR209943
released
Audit warning
1
ChIP-seq
of pancreatic endoderm
Homo sapiens
pancreatic endoderm
Target:
FOXA2
Lab:
AMP-T2D consortium
Project:
AMP