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Assay category
1
DNA accessibility
Assay
964
ChIP-seq
496
total RNA-seq
271
ATAC-seq
189
single cell RNA-seq
56
snATAC-seq
48
WGBS
34
DNase-seq
32
pCHi-C
18
Hi-C
10
RRBS
6
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
small RNA-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
FAIRE-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
7
AMP
RFA
7
AMP
Experiment status
7
released
Genome assembly (visualization)
1
hg19
Organism
7
Homo sapiens
Target of assay
3
control
3
nucleotide modification
Biosample type
tissue
6
cell line
1
primary cell
Organ
7
epithelium
6
pancreas
1
blood vessel
1
vasculature
1
vein
Life stage
6
unknown
1
newborn
Available data
1
bam
1
bed narrowPeak
1
bigBed narrowPeak
1
bigWig
1
tar
Library made from
6
RNA
1
DNA
Date released
6
November, 2020
1
October, 2019
Lab
6
Rohit N. Kulkarni, M.D., Ph.D.
1
AMP-T2D consortium
Replication type
7
isogenic
Audit category:
6
inconsistent ontology term
biosample_type!
tissue
Showing 7 of 7 results
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Experiment
DSR399KWJ
released
Audit error
1
MeRIP-seq
of EndoC_BH1
Homo sapiens
EndoC_BH1
Target:
N6-Methyladenosine_m6A
Lab:
Rohit N. Kulkarni, M.D., Ph.D.
Project:
AMP
Experiment
DSR885XWK
released
Audit error
1
MeRIP-seq
of EndoC_BH1
Homo sapiens
EndoC_BH1
Target:
Control
Lab:
Rohit N. Kulkarni, M.D., Ph.D.
Project:
AMP
Experiment
DSR814PSX
released
Audit error
1
MeRIP-seq
of EndoC_BH1
Homo sapiens
EndoC_BH1
Target:
N6-Methyladenosine_m6A
Lab:
Rohit N. Kulkarni, M.D., Ph.D.
Project:
AMP
Experiment
DSR251XSB
released
Audit error
1
MeRIP-seq
of EndoC_BH1
Homo sapiens
EndoC_BH1
Target:
Control
Lab:
Rohit N. Kulkarni, M.D., Ph.D.
Project:
AMP
Experiment
DSR781LLU
released
Audit error
1
MeRIP-seq
of EndoC_BH1
Homo sapiens
EndoC_BH1
Target:
N6-Methyladenosine_m6A
Lab:
Rohit N. Kulkarni, M.D., Ph.D.
Project:
AMP
Experiment
DSR282KWU
released
Audit error
1
MeRIP-seq
of EndoC_BH1
Homo sapiens
EndoC_BH1
Target:
Control
Lab:
Rohit N. Kulkarni, M.D., Ph.D.
Project:
AMP
Experiment
DSR024UHG
released
FAIRE-seq
of endothelial cell of umbilical vein
Homo sapiens
endothelial cell of umbilical vein newborn
Lab:
AMP-T2D consortium
Project:
AMP