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Citing CMDGA
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Assay category
5
3D chromatin structure
Assay
114
total RNA-seq
101
ChIP-seq
90
ATAC-seq
74
single cell RNA-seq
47
WGBS
6
MeRIP-seq
5
Hi-C
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
Project
3
HPAP
2
AMP
RFA
3
HPAP
2
AMP
Experiment status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
tissue
3
primary cell
2
cell line
Organ
8
epithelium
5
pancreas
4
blood vessel
4
vasculature
3
brain
3
liver
2
vein
1
connective tissue
Life stage
4
adult
1
embryonic
Available data
4
bedpe bed3+
4
hic
3
cool
1
bed bed3+
1
bigWig
1
hdf5
Library made from
5
DNA
Date released
3
October, 2022
1
November, 2019
1
October, 2019
Lab
3
Klaus Kaestner, Upenn
2
AMP-T2D consortium
Replication type
3
anisogenic
1
isogenic
1
unreplicated
Audit category:
3
audit script error
1
inconsistent ontology term
Audit category:
1
inconsistent assembly
biosample_type!
tissue
Showing 5 of 5 results
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Experiment
DSR177NQH
released
Audit error
1
Hi-C
of pancreatic acinar cell
Homo sapiens
pancreatic acinar cell female adult (40 years) and female adult (58 years) and male adult (19 years) and male adult (35 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR954WVM
released
Audit error
1
Hi-C
of pancreatic beta cell
Homo sapiens
pancreatic beta cell female adult (27 years) and female adult (58 years) and male adult (35 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR767WCG
released
Audit error
1
Hi-C
of pancreatic alpha cell
Homo sapiens
pancreatic alpha cell female adult (27 years) and female adult (58 years) and male adult (35 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR617LKP
released
Audit warning
1
Hi-C
of Panc1
Homo sapiens
Panc1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR433ZII
released
Audit error
1
Hi-C
of EndoC_BH1
Homo sapiens
EndoC_BH1
Lab:
AMP-T2D consortium
Project:
AMP