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Citing CMDGA
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Assay category
3
3D chromatin structure
Assay
360
ChIP-seq
317
total RNA-seq
121
ATAC-seq
103
single cell RNA-seq
snATAC-seq
41
WGBS
8
DNase-seq
5
GRO-seq
4
pCHi-C
3
Hi-C
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
STARR-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
3
AMP
RFA
2
AMP
1
AMP2
Experiment status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
tissue
2
cell line
1
primary cell
Organ
2
epithelium
1
blood vessel
1
liver
1
pancreas
1
vasculature
1
vein
Life stage
2
unknown
1
embryonic
Available data
3
hic
2
bedpe bed3+
Library made from
3
DNA
Date released
1
August, 2021
1
November, 2019
1
October, 2019
Lab
2
AMP-T2D consortium
1
Bing Ren, UCSD
Replication type
10
isogenic
5
anisogenic
3
unreplicated
Audit category:
1
audit script error
1
inconsistent ontology term
biosample_type!
tissue
assay_title!
snATAC-seq
Showing 3 of 3 results
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Experiment
DSR744JJN
released
Hi-C
of HepG2
Homo sapiens
HepG2
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR251SCT
released
Audit error
1
Hi-C
of endothelial cell of umbilical vein
Homo sapiens
endothelial cell of umbilical vein
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR433ZII
released
Audit error
1
Hi-C
of EndoC_BH1
Homo sapiens
EndoC_BH1
Lab:
AMP-T2D consortium
Project:
AMP