Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Assay category
7
DNA methylation
Assay
733
ChIP-seq
230
total RNA-seq
131
ATAC-seq
37
single cell RNA-seq
28
pCHi-C
26
DNase-seq
11
Hi-C
10
RRBS
10
snATAC-seq
7
WGBS
6
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
FAIRE-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
6
HPAP
1
AMP
RFA
6
HPAP
1
AMP
Experiment status
7
released
Genome assembly (visualization)
1
GRCh38
Organism
7
Homo sapiens
Biosample type
6
primary cell
tissue
1
cell line
Organ
6
epithelium
6
pancreas
1
liver
Life stage
adult
7
child
Available data
4
zippedFastqFolder
3
fastq
2
tsv
1
bam
1
bed bedMethyl
1
bigBed bedMethyl
1
bigWig
Platform
6
Illumina NovaSeq 6000
1
Illumina HiSeq X Ten
Run type
7
paired-ended
Read length (nt)
4
101
2
100
1
151
Library made from
7
DNA
Date released
4
May, 2022
2
February, 2021
1
November, 2018
Lab
6
Klaus Kaestner, Upenn
1
AMP-T2D consortium
Replication type
4
unreplicated
3
isogenic
biosample_type!
tissue
replicates.library.biosample.life_stage!
adult
Showing 7 of 7 results
table-tab-icon
matrix-icon
Download
Experiment
DSR309DLG
released
WGBS
of pancreatic beta cell
Homo sapiens
pancreatic beta cell male child (8 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR818WOM
released
WGBS
of pancreatic beta cell
Homo sapiens
pancreatic beta cell male child (13 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR800UDW
released
WGBS
of pancreatic alpha cell
Homo sapiens
pancreatic alpha cell male child (8 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR838FDD
released
WGBS
of pancreatic alpha cell
Homo sapiens
pancreatic alpha cell male child (13 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR163MXE
released
WGBS
of pancreatic alpha cell
Homo sapiens
pancreatic alpha cell male child (3 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR791IRT
released
WGBS
of pancreatic alpha cell
Homo sapiens
pancreatic alpha cell female child (14 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
TSTSR496DZA
released
WGBS
of HepG2
Homo sapiens
HepG2
Lab:
AMP-T2D consortium
Project:
AMP