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Citing CMDGA
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Assay category
3
DNA accessibility
Assay
685
ChIP-seq
249
total RNA-seq
71
ATAC-seq
15
pCHi-C
8
Hi-C
6
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
2
HiChIP
2
single cell RNA-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
3
AMP
RFA
3
AMP
Experiment status
3
released
Genome assembly (visualization)
3
GRCh38
3
hg19
Organism
3
Homo sapiens
Biosample type
tissue
primary cell
2
cell line
1
in vitro differentiated cells
Organ
1
connective tissue
1
epithelium
1
kidney
1
pancreas
Life stage
1
adult
1
child
1
unknown
Available data
3
bam
3
bed narrowPeak
3
bigBed narrowPeak
3
bigWig
2
bed broadPeak
2
bigBed broadPeak
1
bed bed3+
1
fastq
Platform
1
Illumina HiSeq 2000
Run type
1
paired-ended
Read length (nt)
1
36
Library made from
3
DNA
Date released
2
October, 2019
1
August, 2017
Lab
3
AMP-T2D consortium
Replication type
3
isogenic
biosample_type!
tissue
primary cell
assay_title!
WGBS
Showing 3 of 3 results
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Experiment
DSR718ICF
released
DNase-seq
of Panc1
Homo sapiens
Panc1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR366LGT
released
DNase-seq
of glomerular visceral epithelial cell
Homo sapiens
glomerular visceral epithelial cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR999372
released
DNase-seq
of adipocyte
Homo sapiens
adipocyte
Lab:
AMP-T2D consortium
Project:
AMP