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Schema
Citing CMDGA
Clear Filters
Assay category
2
3D chromatin structure
Assay
484
ChIP-seq
113
total RNA-seq
29
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
DNase-seq
2
Hi-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
2
AMP
RFA
2
AMP
Experiment status
2
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
2
Homo sapiens
Biosample type
6
primary cell
6
tissue
2
cell line
Organ
1
liver
1
pancreas
Life stage
1
adult
1
child
Available data
bedpe bed3+
2
hic
1
bed bed3+
1
bigWig
1
fastq
1
hdf5
Platform
1
Illumina HiSeq 2000
Run type
1
paired-ended
Read length (nt)
1
50
Library made from
2
DNA
Date released
1
December, 2018
1
October, 2019
Lab
2
AMP-T2D consortium
Replication type
2
isogenic
Audit category:
1
inconsistent assembly
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bedpe bed3+
Showing 2 of 2 results
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Experiment
DSR617LKP
released
Audit warning
1
Hi-C
of Panc1
Homo sapiens
Panc1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR542TGF
released
Hi-C
of HepG2
Homo sapiens
HepG2
Lab:
AMP-T2D consortium
Project:
AMP