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Schema
Citing CMDGA
Clear Filters
Assay category
2
3D chromatin structure
Assay
93
total RNA-seq
68
ChIP-seq
26
ATAC-seq
2
Capture-C
2
Hi-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
STARR-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
2
AMP
RFA
1
AMP
1
AMP2
Experiment status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
16
tissue
6
primary cell
2
cell line
Organ
1
epithelium
1
liver
1
pancreas
Life stage
1
embryonic
1
unknown
Available data
2
bedpe bed3+
2
hic
Library made from
2
DNA
Date released
1
August, 2021
1
November, 2019
Lab
1
AMP-T2D consortium
1
Bing Ren, UCSD
Replication type
isogenic
2
unreplicated
Audit category:
1
inconsistent ontology term
target.investigated_as!
other post-translational modification
replication_type!
isogenic
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Experiment
DSR744JJN
released
Hi-C
of HepG2
Homo sapiens
HepG2
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR433ZII
released
Audit error
1
Hi-C
of EndoC_BH1
Homo sapiens
EndoC_BH1
Lab:
AMP-T2D consortium
Project:
AMP