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Assay category
1
3D chromatin structure
1
DNA accessibility
Assay
1
DNase-seq
1
Hi-C
1
pCHi-C
Project
3
AMP
RFA
3
AMP
Experiment status
3
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
3
Homo sapiens
Biosample type
205
tissue
37
primary cell
25
in vitro differentiated cells
3
cell line
3
stem cell
Organ
2
pancreas
1
liver
Life stage
3
adult
Available data
582
bam
522
bigWig
427
fastq
404
bed narrowPeak
355
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Library made from
3
DNA
Date released
2
October, 2019
1
February, 2021
Lab
3
AMP-T2D consortium
Replication type
3
isogenic
Audit category:
1
inconsistent assembly
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Experiment
DSR583PNT
released
pCHi-C
of HepG2
Homo sapiens
HepG2
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR617LKP
released
Audit warning
1
Hi-C
of Panc1
Homo sapiens
Panc1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR718ICF
released
DNase-seq
of Panc1
Homo sapiens
Panc1
Lab:
AMP-T2D consortium
Project:
AMP