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Citing CMDGA
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Assay category
7
3D chromatin structure
Assay
270
ChIP-seq
247
total RNA-seq
200
ATAC-seq
184
single cell RNA-seq
56
snATAC-seq
47
WGBS
26
DNase-seq
17
pCHi-C
9
RRBS
7
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Project
3
AMP
3
HPAP
1
ITG
RFA
3
AMP
3
HPAP
1
ITG
Experiment status
7
released
Genome assembly (visualization)
6
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
16
tissue
7
primary cell
4
cell line
4
in vitro differentiated cells
Organ
7
epithelium
4
blood vessel
4
vasculature
brain
3
pancreas
2
vein
1
connective tissue
1
liver
Life stage
4
adult
3
unknown
Available data
6
hic
4
bedpe bed3+
3
cool
1
bed bed3+
1
bigWig
1
hdf5
Library made from
7
DNA
Date released
3
October, 2022
1
July, 2019
1
March, 2020
1
March, 2023
1
October, 2019
Lab
3
AMP-T2D consortium
3
Klaus Kaestner, Upenn
1
ITG
Replication type
5
anisogenic
1
isogenic
1
unreplicated
Audit category:
4
audit script error
organ_slims!
brain
Showing 7 of 7 results
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Experiment
DSR798SDK
released
Hi-C
of chondrocytes
Homo sapiens
chondrocytes female adult (58 years) and female adult (63 years) and female adult (65 years) and female adult (73 years) and female adult (75 years) and male adult (61 year) and male adult (72 years) and male adult (75 years)
Lab:
ITG
Project:
ITG
Experiment
DSR177NQH
released
Audit error
1
Hi-C
of pancreatic acinar cell
Homo sapiens
pancreatic acinar cell female adult (40 years) and female adult (58 years) and male adult (19 years) and male adult (35 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR954WVM
released
Audit error
1
Hi-C
of pancreatic beta cell
Homo sapiens
pancreatic beta cell female adult (27 years) and female adult (58 years) and male adult (35 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR767WCG
released
Audit error
1
Hi-C
of pancreatic alpha cell
Homo sapiens
pancreatic alpha cell female adult (27 years) and female adult (58 years) and male adult (35 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR430XOJ
released
Hi-C
of endothelial cell of umbilical vein
Homo sapiens
endothelial cell of umbilical vein
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR251SCT
released
Audit error
1
Hi-C
of endothelial cell of umbilical vein
Homo sapiens
endothelial cell of umbilical vein
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR933OWU
released
Hi-C
of endothelial cell of hepatic sinusoid
Homo sapiens
endothelial cell of hepatic sinusoid
Lab:
AMP-T2D consortium
Project:
AMP