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Citing CMDGA
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Assay category
3
DNA binding
Assay
4
pCHi-C
3
ChIP-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
GRO-seq
Project
7
AMP
RFA
7
AMP
Experiment status
7
released
Genome assembly (visualization)
3
GRCh38
3
hg19
Organism
7
Homo sapiens
Target of assay
2
histone
2
histone modification
1
broad histone mark
1
control
1
narrow histone mark
Biosample type
892
tissue
490
cell line
296
primary cell
203
in vitro differentiated cells
7
stem cell
Organ
1
connective tissue
Life stage
7
unknown
Available data
4
tsv
3
bam
3
bed bed3+
3
fastq
2
bed narrowPeak
2
bigWig
Platform
3
Illumina HiSeq 2500
Run type
3
single-ended
Read length (nt)
2
36
2
50
Library made from
7
DNA
Date released
4
March, 2020
3
December, 2017
Lab
7
AMP-T2D consortium
Replication type
3
isogenic
3
unreplicated
1
anisogenic
Audit category:
1
inconsistent ontology term
Audit category:
2
inconsistent control read length
Showing 7 of 7 results
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Experiment
DSR159GRR
released
pCHi-C
of trophoblast
Homo sapiens
trophoblast
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR055YXC
released
pCHi-C
of neural progenitor cell (neural stem cell)
Homo sapiens
neural progenitor cell (neural stem cell)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR881MKA
released
Audit error
1
pCHi-C
of mesenchymal stem cell
Homo sapiens
mesenchymal stem cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR543FXV
released
pCHi-C
of mesendoderm
Homo sapiens
mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR923383
released
Audit warning
1
ChIP-seq
of hESC
Homo sapiens
hESC (embryoid body cell)
Target:
H3K4me1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR015572
released
Audit warning
1
ChIP-seq
of hESC
Homo sapiens
hESC (embryoid body cell)
Target:
H3K27ac
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR481230
released
ChIP-seq
of hESC
Homo sapiens
hESC (embryoid body cell)
Target:
Control
Lab:
AMP-T2D consortium
Project:
AMP