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Citing CMDGA
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Assay category
4
DNA binding
Assay
4
ChIP-seq
Project
4
AMP
RFA
4
AMP
Experiment status
4
released
Genome assembly (visualization)
4
GRCh38
4
hg19
Organism
4
Homo sapiens
Target of assay
18
transcription factor
8
histone
8
histone modification
4
broad histone mark
4
narrow histone mark
1
RNA binding protein
Biosample type
23
primary cell
4
tissue
1
cell line
1
in vitro differentiated cells
Organ
3
pancreas
1
brain
Life stage
3
unknown
1
embryonic
Available data
4
bam
4
bigWig
4
fastq
3
bed bed3+
2
bed narrowPeak
1
bed broadPeak
1
bigBed narrowPeak
1
tagAlign
Platform
1
Illumina Genome Analyzer
1
Illumina Genome Analyzer II
1
Illumina Genome Analyzer IIx
1
Illumina HiSeq 2000
Run type
4
single-ended
Read length (nt)
2
36
2
51
1
49
Library made from
4
DNA
Date released
3
August, 2017
1
October, 2017
Lab
4
AMP-T2D consortium
Replication type
3
anisogenic
1
unreplicated
Audit category:
4
missing controlled_by
Showing 4 of 4 results
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Experiment
TSTSR409697
released
Audit not_compliant
1
ChIP-seq
of brain
Homo sapiens
brain male embryo (122 days)
Target:
H3K4me3
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR033518
released
Audit not_compliant
1
ChIP-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans female (37 years) and female (41 year) and female (58 years) and male (36 years)
Target:
H3K4me3
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR760577
released
Audit not_compliant
1
ChIP-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans male (38 years) and male (62 years) and male (63 years)
Target:
H2AFZ
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR903829
released
Audit not_compliant
1
ChIP-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans female (38 years) and male (38 years)
Target:
H3K27ac
Lab:
AMP-T2D consortium
Project:
AMP