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Citing CMDGA
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Assay category
3
DNA accessibility
Assay
329
ATAC-seq
261
single cell RNA-seq
253
ChIP-seq
242
total RNA-seq
84
snATAC-seq
57
WGBS
47
pCHi-C
29
Hi-C
19
RRBS
5
GRO-seq
4
MeRIP-seq
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
RNA microarray
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
3
AMP
RFA
3
AMP
Experiment status
3
released
Organism
3
Homo sapiens
Biosample type
2
primary cell
1
tissue
Organ
2
epithelium
2
kidney
1
liver
Life stage
3
adult
Available data
bam
205
bed narrowPeak
205
bigBed narrowPeak
205
bigWig
202
bed broadPeak
202
bigBed broadPeak
200
bed bed3+
12
fastq
Library made from
3
DNA
Date released
2
October, 2019
1
August, 2017
Lab
3
AMP-T2D consortium
Replication type
2
anisogenic
1
unreplicated
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bam
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Experiment
DSR920RBU
released
DNase-seq
of kidney glomerular epithelial cell
Homo sapiens
kidney glomerular epithelial cell male adult (46 years) and male adult (62 years) and male adult (63 years) and male adult (65 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR290FAD
released
DNase-seq
of kidney tubule cell
Homo sapiens
kidney tubule cell female adult (80 years) and male adult (62 years) and male adult (63 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR715510
released
DNase-seq
of right lobe of liver
Homo sapiens
right lobe of liver female adult (53 years)
Lab:
AMP-T2D consortium
Project:
AMP