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Schema
Citing CMDGA
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Assay category
2
3D chromatin structure
Assay
34
ChIP-seq
2
Hi-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Project
1
AMP
1
ITG
RFA
1
AMP
1
ITG
Experiment status
2
released
Genome assembly (visualization)
1
GRCh38
Organism
2
Homo sapiens
Biosample type
1
cell line
1
primary cell
Organ
1
liver
Life stage
1
adult
1
child
Available data
1
fastq
1
hic
Platform
1
Illumina HiSeq 2000
Run type
1
paired-ended
Read length (nt)
1
50
Library made from
2
DNA
Date released
10
March, 2020
4
July, 2019
4
October, 2019
3
August, 2021
3
October, 2022
2
November, 2019
1
December, 2018
1
March, 2019
1
March, 2023
Lab
1
AMP-T2D consortium
1
ITG
Replication type
1
anisogenic
1
isogenic
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Experiment
DSR798SDK
released
Hi-C
of chondrocytes
Homo sapiens
chondrocytes female adult (58 years) and female adult (63 years) and female adult (65 years) and female adult (73 years) and female adult (75 years) and male adult (61 year) and male adult (72 years) and male adult (75 years)
Lab:
ITG
Project:
ITG
Experiment
TSTSR542TGF
released
Hi-C
of HepG2
Homo sapiens
HepG2
Lab:
AMP-T2D consortium
Project:
AMP