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Assay category
1
DNA accessibility
Assay
1549
ChIP-seq
1213
total RNA-seq
322
ATAC-seq
270
single cell RNA-seq
86
RNA microarray
79
snATAC-seq
28
WGBS
28
pCHi-C
18
Hi-C
15
RRBS
7
small RNA-seq
5
GRO-seq
5
STARR-seq
4
DNase-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
FAIRE-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
snDrop-seq
1
whole genome sequencing assay
Project
1
AMP
RFA
1
AMP
Experiment status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
tissue
Organ
1
blood vessel
epithelium
1
pancreas
1
vasculature
1
vein
Life stage
1
unknown
Available data
1
bam
1
bed narrowPeak
1
bigBed narrowPeak
1
bigWig
1
fastq
Platform
1
Illumina Genome Analyzer I
Run type
1
single-ended
Read length (nt)
1
35
Library made from
1
DNA
Date released
1
August, 2017
Lab
1
AMP-T2D consortium
Replication type
anisogenic
1
unreplicated
files.file_type!
bed bed3+
organ_slims!
epithelium
replication_type!
anisogenic
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Experiment
TSTSR121227
released
FAIRE-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans male (53 years)
Lab:
AMP-T2D consortium
Project:
AMP