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Citing CMDGA
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Assay category
5
DNA accessibility
Assay
1692
ChIP-seq
1400
total RNA-seq
412
ATAC-seq
293
single cell RNA-seq
86
RNA microarray
83
snATAC-seq
55
pCHi-C
28
WGBS
23
Hi-C
18
small RNA-seq
15
RRBS
5
DNase-seq
5
GRO-seq
5
STARR-seq
4
FAIRE-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
5
AMP
RFA
5
AMP
Experiment status
5
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
5
Homo sapiens
Biosample type
2
primary cell
2
tissue
1
in vitro differentiated cells
Organ
epithelium
3
kidney
1
connective tissue
1
liver
1
pancreas
Life stage
4
unknown
1
adult
Available data
192
bam
192
bed narrowPeak
192
bigBed narrowPeak
192
bigWig
190
bed broadPeak
190
bigBed broadPeak
bed bed3+
12
fastq
Platform
2
Illumina HiSeq 2000
1
Illumina Genome Analyzer
1
Illumina Genome Analyzer II
1
Illumina Genome Analyzer IIx
Run type
2
paired-ended
2
single-ended
Read length (nt)
2
36
1
20
1
101
Library made from
5
DNA
Date released
5
August, 2017
Lab
5
AMP-T2D consortium
Replication type
3
isogenic
1
anisogenic
1
unreplicated
files.file_type!
bed bed3+
bed bed3
organ_slims!
epithelium
Showing 5 of 5 results
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Experiment
TSTSR999372
released
DNase-seq
of adipocyte
Homo sapiens
adipocyte
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR715510
released
DNase-seq
of right lobe of liver
Homo sapiens
right lobe of liver female adult (53 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR251267
released
DNase-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR986440
released
DNase-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR171380
released
DNase-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans
Lab:
AMP-T2D consortium
Project:
AMP