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Citing CMDGA
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Assay category
3
3D chromatin structure
Assay
546
ChIP-seq
23
ATAC-seq
5
WGBS
3
Hi-C
2
RRBS
2
STARR-seq
2
pCHi-C
1
DNase-seq
1
whole genome sequencing assay
Project
3
AMP
RFA
2
AMP
1
AMP2
Experiment status
3
released
Genome assembly (visualization)
2
hg19
Organism
3
Homo sapiens
Biosample type
2
cell line
1
tissue
Organ
8
pancreas
6
epithelium
6
musculature of body
4
limb
3
blood vessel
3
heart
3
liver
3
vasculature
2
vein
1
kidney
Life stage
1
adult
1
child
1
unknown
Available data
2
bedpe bed3+
2
hic
bed bed3+
1
bigWig
1
fastq
1
hdf5
Platform
1
Illumina HiSeq 2000
Run type
1
paired-ended
Read length (nt)
1
50
Library made from
3
DNA
Date released
1
August, 2021
1
December, 2018
1
March, 2020
Lab
2
AMP-T2D consortium
1
Bing Ren, UCSD
Replication type
2
unreplicated
1
isogenic
files.file_type!
bed bed3+
assay_slims!
Transcription
Showing 3 of 3 results
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Experiment
DSR744JJN
released
Hi-C
of HepG2
Homo sapiens
HepG2
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR477FKL
released
Hi-C
of liver
Homo sapiens
liver male adult (32 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR542TGF
released
Hi-C
of HepG2
Homo sapiens
HepG2
Lab:
AMP-T2D consortium
Project:
AMP