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Citing CMDGA
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Assay category
3
DNA binding
Assay
3
ChIP-seq
Project
3
AMP
RFA
3
AMP
Experiment status
3
released
Genome assembly (visualization)
3
GRCh38
3
hg19
Organism
3
Homo sapiens
Target of assay
75
transcription factor
38
control
15
histone
15
histone modification
12
broad histone mark
12
recombinant protein
3
chromatin remodeller
3
narrow histone mark
1
RNA binding protein
Biosample type
2
tissue
1
cell line
Organ
2
liver
1
blood
1
bodily fluid
Life stage
2
adult
1
child
Available data
3
bam
3
bed narrowPeak
3
bigBed narrowPeak
3
bigWig
3
fastq
Platform
3
Illumina HiSeq 2000
Run type
3
single-ended
Read length (nt)
17
36
11
76
8
25
4
75
3
50
3
100
2
70
1
30
Library made from
3
DNA
Date released
2
December, 2017
1
January, 2019
Lab
3
AMP-T2D consortium
Replication type
3
isogenic
Audit category:
2
inconsistent control
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Experiment
TSTSR548EWB
released
ChIP-seq
of GM12878
Homo sapiens
GM12878
Target:
CBX5
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR055572
released
Audit error
1
ChIP-seq
of liver
Homo sapiens
liver female child (4 years)
Target:
REST
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR039304
released
Audit error
1
ChIP-seq
of liver
Homo sapiens
liver male adult (32 years)
Target:
REST
Lab:
AMP-T2D consortium
Project:
AMP