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Citing CMDGA
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Assay category
1
3D chromatin structure
1
DNA binding
Assay
1
ChIP-seq
1
Hi-C
Project
2
AMP
RFA
2
AMP
Experiment status
2
released
Genome assembly (visualization)
2
GRCh38
2
hg19
Organism
2
Homo sapiens
Target of assay
1
histone
1
histone modification
1
narrow histone mark
Biosample type
1
cell line
1
primary cell
Organ
1
pancreas
Life stage
1
adult
1
unknown
Available data
4
bigWig
3
bam
3
bed narrowPeak
3
bigBed narrowPeak
3
fastq
bed broadPeak
2
tagAlign
1
bed bed3+
1
bigBed broadPeak
1
hdf5
Platform
1
Illumina HiSeq 2000
Run type
1
paired-ended
1
single-ended
Read length (nt)
1
36
1
76
Library made from
2
DNA
Date released
1
August, 2017
1
October, 2019
Lab
2
AMP-T2D consortium
Replication type
2
isogenic
Audit category:
43
inconsistent control read length
9
inconsistent control run_type
2
inconsistent assembly
files.file_type!
bed broadPeak
Showing 2 of 2 results
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Experiment
DSR617LKP
released
Audit warning
1
Hi-C
of Panc1
Homo sapiens
Panc1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR410352
released
Audit warning
3
ChIP-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast male (22 years)
Target:
H3K4me3
Lab:
AMP-T2D consortium
Project:
AMP