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Citing CMDGA
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Assay category
2
DNA binding
1
DNA accessibility
1
DNA methylation
1
Transcription
Assay
2
ChIP-seq
1
DNase-seq
1
RRBS
1
total RNA-seq
Project
5
AMP
RFA
5
AMP
Experiment status
5
released
Genome assembly (visualization)
5
hg19
2
GRCh38
Organism
5
Homo sapiens
Target of assay
1
control
1
histone
1
histone modification
1
narrow histone mark
Biosample type
5
primary cell
Life stage
5
unknown
Available data
18
bam
18
bigWig
17
fastq
16
bed narrowPeak
16
bigBed narrowPeak
bed broadPeak
14
bigBed broadPeak
12
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
1
tsv
Platform
2
Illumina Genome Analyzer IIx
1
Illumina HiSeq 2000
Run type
3
single-ended
1
paired-ended
Read length (nt)
3
36
1
76
Library made from
5
DNA
Date released
4
August, 2017
1
July, 2019
Lab
5
AMP-T2D consortium
Replication type
5
isogenic
Audit category:
1
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
files.file_type!
bed broadPeak
Showing 5 of 5 results
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Experiment
DSR833JPE
released
total RNA-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR986440
released
DNase-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR288454
released
RRBS
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR410352
released
Audit warning
3
ChIP-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast male (22 years)
Target:
H3K4me3
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR633851
released
ChIP-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast male (22 years)
Target:
Control
Lab:
AMP-T2D consortium
Project:
AMP