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Citing CMDGA
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Assay category
6
3D chromatin structure
Assay
6
Hi-C
Project
3
HPAP
2
AMP
1
ITG
RFA
3
HPAP
2
AMP
1
ITG
Experiment status
6
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
11
tissue
6
primary cell
4
in vitro differentiated cells
2
cell line
Organ
5
epithelium
3
pancreas
2
blood vessel
2
vasculature
2
vein
Life stage
4
adult
2
unknown
Available data
613
bigWig
609
bam
409
fastq
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Library made from
6
DNA
Date released
3
October, 2022
1
March, 2020
1
March, 2023
1
October, 2019
Lab
3
Klaus Kaestner, Upenn
2
AMP-T2D consortium
1
ITG
Replication type
5
anisogenic
1
unreplicated
Audit category:
4
audit script error
files.file_type!
bed narrowPeak
Showing 6 of 6 results
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Experiment
DSR798SDK
released
Hi-C
of chondrocytes
Homo sapiens
chondrocytes female adult (58 years) and female adult (63 years) and female adult (65 years) and female adult (73 years) and female adult (75 years) and male adult (61 year) and male adult (72 years) and male adult (75 years)
Lab:
ITG
Project:
ITG
Experiment
DSR177NQH
released
Audit error
1
Hi-C
of pancreatic acinar cell
Homo sapiens
pancreatic acinar cell female adult (40 years) and female adult (58 years) and male adult (19 years) and male adult (35 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR954WVM
released
Audit error
1
Hi-C
of pancreatic beta cell
Homo sapiens
pancreatic beta cell female adult (27 years) and female adult (58 years) and male adult (35 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR767WCG
released
Audit error
1
Hi-C
of pancreatic alpha cell
Homo sapiens
pancreatic alpha cell female adult (27 years) and female adult (58 years) and male adult (35 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR430XOJ
released
Hi-C
of endothelial cell of umbilical vein
Homo sapiens
endothelial cell of umbilical vein
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR251SCT
released
Audit error
1
Hi-C
of endothelial cell of umbilical vein
Homo sapiens
endothelial cell of umbilical vein
Lab:
AMP-T2D consortium
Project:
AMP