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Assay category
5
DNA methylation
Assay
342
total RNA-seq
252
ChIP-seq
137
single cell RNA-seq
80
ATAC-seq
49
pCHi-C
21
snATAC-seq
10
small RNA-seq
8
Hi-C
7
WGBS
5
GRO-seq
5
RRBS
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
2
RNA microarray
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
5
AMP
RFA
5
AMP
Experiment status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
4
primary cell
1
tissue
Organ
epithelium
3
kidney
1
brain
1
connective tissue
1
eye
1
heart
1
liver
1
musculature of body
1
pancreas
1
vasculature
Life stage
adult
5
unknown
Available data
5
bed bedMethyl
5
bigBed bedMethyl
1
fastq
Platform
1
Illumina Genome Analyzer IIx
Run type
1
single-ended
Read length (nt)
1
36
Library made from
5
DNA
Date released
4
July, 2019
1
August, 2017
Lab
5
AMP-T2D consortium
Replication type
5
isogenic
Audit category:
1
inconsistent ontology term
files.file_type!
bed narrowPeak
organ_slims!
epithelium
replicates.library.biosample.life_stage!
adult
Showing 5 of 5 results
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Experiment
DSR253RYM
released
Audit error
1
RRBS
of cardiac fibroblast
Homo sapiens
cardiac fibroblast
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR793OXZ
released
RRBS
of cardiac muscle cell
Homo sapiens
cardiac muscle cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR488BRN
released
RRBS
of skeletal muscle cell
Homo sapiens
skeletal muscle cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR210DNG
released
RRBS
of islet of Langerhans
Homo sapiens
islet of Langerhans male (53 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR288454
released
RRBS
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast
Lab:
AMP-T2D consortium
Project:
AMP