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Citing CMDGA
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Assay category
7
DNA methylation
Assay
1281
total RNA-seq
483
ChIP-seq
175
single cell RNA-seq
91
ATAC-seq
87
RNA microarray
39
pCHi-C
27
WGBS
27
snATAC-seq
18
Hi-C
15
small RNA-seq
10
MeRIP-seq
7
RRBS
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNase-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
7
AMP
RFA
7
AMP
Experiment status
7
released
Genome assembly (visualization)
7
hg19
Organism
7
Homo sapiens
Biosample type
primary cell
7
tissue
Organ
musculature of body
2
pancreas
1
brain
1
heart
1
kidney
1
liver
1
pericardium
Life stage
6
adult
1
unknown
Available data
7
bed bedMethyl
7
bigBed bedMethyl
1
fastq
Platform
1
Illumina Genome Analyzer IIx
Run type
1
single-ended
Read length (nt)
1
36
Library made from
7
DNA
Date released
6
July, 2019
1
August, 2017
Lab
7
AMP-T2D consortium
Replication type
7
isogenic
files.file_type!
bed narrowPeak
organ_slims!
musculature of body
biosample_type!
primary cell
Showing 7 of 7 results
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Experiment
DSR210DNG
released
RRBS
of islet of Langerhans
Homo sapiens
islet of Langerhans male (53 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR222CVR
released
RRBS
of brain
Homo sapiens
brain male adult (66 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR841GWU
released
RRBS
of kidney
Homo sapiens
kidney female adult (83 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR478ZAU
released
RRBS
of heart left ventricle
Homo sapiens
heart left ventricle male adult (26 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR015YSF
released
RRBS
of pancreas
Homo sapiens
pancreas male adult (71 year)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR193QCQ
released
RRBS
of pericardium
Homo sapiens
pericardium female adult (70 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR335337
released
RRBS
of liver
Homo sapiens
liver female adult (83 years)
Lab:
AMP-T2D consortium
Project:
AMP