Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Assay category
8
3D chromatin structure
Assay
196
total RNA-seq
181
ChIP-seq
105
ATAC-seq
83
single cell RNA-seq
28
pCHi-C
27
DNase-seq
11
small RNA-seq
8
Hi-C
5
snATAC-seq
4
MeRIP-seq
3
FAIRE-seq
2
Capture-C
2
snDrop-seq
1
DNAme array
Project
4
AMP
3
HPAP
1
ITG
RFA
3
AMP
3
HPAP
1
AMP2
1
ITG
Experiment status
8
released
Genome assembly (visualization)
6
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
5
primary cell
3
tissue
Organ
5
pancreas
4
epithelium
1
blood vessel
1
heart
1
vasculature
1
vein
Life stage
6
adult
1
embryonic
1
unknown
Available data
8
hic
7
bedpe bed3+
3
cool
bedpe
Library made from
8
DNA
Date released
3
October, 2022
2
March, 2020
1
August, 2021
1
March, 2023
1
October, 2019
Lab
3
AMP-T2D consortium
3
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
1
ITG
Replication type
15
unreplicated
10
isogenic
8
anisogenic
Audit category:
3
audit script error
files.file_type!
bedpe
Showing 8 of 8 results
table-tab-icon
matrix-icon
Download
Experiment
DSR798SDK
released
Hi-C
of chondrocytes
Homo sapiens
chondrocytes female adult (58 years) and female adult (63 years) and female adult (65 years) and female adult (73 years) and female adult (75 years) and male adult (61 year) and male adult (72 years) and male adult (75 years)
Lab:
ITG
Project:
ITG
Experiment
DSR177NQH
released
Audit error
1
Hi-C
of pancreatic acinar cell
Homo sapiens
pancreatic acinar cell female adult (40 years) and female adult (58 years) and male adult (19 years) and male adult (35 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR954WVM
released
Audit error
1
Hi-C
of pancreatic beta cell
Homo sapiens
pancreatic beta cell female adult (27 years) and female adult (58 years) and male adult (35 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR767WCG
released
Audit error
1
Hi-C
of pancreatic alpha cell
Homo sapiens
pancreatic alpha cell female adult (27 years) and female adult (58 years) and male adult (35 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR942HZR
released
Hi-C
of islet of Langerhans
Homo sapiens
islet of Langerhans female adult (56 years) and female adult (59 years) and male adult (53 years)
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR905BNL
released
Hi-C
of pancreas
Homo sapiens
pancreas female adult (30 years) and male adult (34 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR430XOJ
released
Hi-C
of endothelial cell of umbilical vein
Homo sapiens
endothelial cell of umbilical vein
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR786VPZ
released
Hi-C
of heart
Homo sapiens
heart embryo (57 days) and embryo (67 days)
Lab:
AMP-T2D consortium
Project:
AMP