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Schema
Citing CMDGA
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Assay category
1
3D chromatin structure
Assay
474
total RNA-seq
153
ChIP-seq
25
ATAC-seq
9
DNase-seq
6
WGBS
4
pCHi-C
4
single cell RNA-seq
3
small RNA-seq
2
Capture-C
1
Hi-C
1
RNA microarray
1
RRBS
Project
4
AMP
1
T1D
RFA
4
AMP
1
T1D
Experiment status
5
released
Genome assembly (visualization)
2
hg19
Organism
5
Homo sapiens
Biosample type
3
primary cell
1
stem cell
1
tissue
Organ
5
brain
5
connective tissue
5
liver
5
musculature of body
4
blood vessel
4
eye
4
limb
4
vasculature
3
epithelium
3
heart
3
kidney
3
pancreas
2
intestine
2
thymus
1
adipose tissue
1
adrenal gland
1
bone element
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
urinary bladder
1
vein
Life stage
4
unknown
1
adult
Available data
2
bed bed3+
2
tsv
1
bam
bedpe bed3+
1
bigWig
1
fastq
1
hdf5
Library made from
5
DNA
Date released
2
March, 2020
1
February, 2021
1
July, 2019
1
May, 2021
Lab
4
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Replication type
3
anisogenic
2
isogenic
Audit category:
1
inconsistent ontology term
files.file_type!
bedpe bed3+
Showing 5 of 5 results
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Experiment
DSR241RZY
released
pCHi-C
of osteoblast
Homo sapiens
osteoblast adult
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR916ELW
released
pCHi-C
of adult endothelial progenitor cell
Homo sapiens
adult endothelial progenitor cell
Lab:
Kyle Gaulton, UCSD
Project:
T1D
Experiment
DSR881MKA
released
Audit error
1
pCHi-C
of mesenchymal stem cell
Homo sapiens
mesenchymal stem cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR437GEP
released
pCHi-C
of adipose tissue
Homo sapiens
adipose tissue
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR770TGA
released
Hi-C
of brain pericyte
Homo sapiens
brain pericyte
Lab:
AMP-T2D consortium
Project:
AMP