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Citing CMDGA
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Assay category
3
DNA accessibility
Assay
883
ChIP-seq
403
total RNA-seq
161
ATAC-seq
148
single cell RNA-seq
49
pCHi-C
21
snATAC-seq
13
Hi-C
13
WGBS
11
RRBS
10
small RNA-seq
6
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
RNA microarray
2
FAIRE-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
3
AMP
RFA
3
AMP
Experiment status
3
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
3
Homo sapiens
Biosample type
1
cell line
1
primary cell
1
tissue
Organ
1
epithelium
1
kidney
1
pancreas
Life stage
adult
2
unknown
1
child
Available data
167
bam
167
bed narrowPeak
167
bigBed narrowPeak
167
bigWig
164
bed broadPeak
bigBed broadPeak
162
bed bed3+
7
fastq
Platform
1
Illumina Genome Analyzer
Run type
1
single-ended
Read length (nt)
1
20
Library made from
3
DNA
Date released
2
August, 2017
1
October, 2019
Lab
3
AMP-T2D consortium
Replication type
2
isogenic
1
anisogenic
files.file_type!
bigBed broadPeak
replicates.library.biosample.life_stage!
adult
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Experiment
DSR366LGT
released
DNase-seq
of glomerular visceral epithelial cell
Homo sapiens
glomerular visceral epithelial cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR986440
released
DNase-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR171380
released
DNase-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans
Lab:
AMP-T2D consortium
Project:
AMP