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Assay
1871
ChIP-seq
1533
total RNA-seq
531
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
31
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
3
AMP
3
T1D
RFA
3
AMP
3
T1D
Experiment status
6
released
Organism
6
Homo sapiens
Biosample type
3
cell line
3
tissue
Organ
3
kidney
Life stage
4
unknown
3
adult
Available data
3
tsv
Library made from
3
DNA
3
RNA
Date released
3
February, 2021
3
February, 2023
Lab
3
AMP-T2D consortium
3
Kyle Gaulton, UCSD
Replication type
3
isogenic
2
anisogenic
1
unreplicated
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Experiment
DSR991KIL
released
CRISPR genome editing followed by DNA sequencing
of EndoC_BH1
Homo sapiens
EndoC_BH1
Lab:
Kyle Gaulton, UCSD
Project:
T1D
Experiment
DSR618IYM
released
CRISPR genome editing followed by DNA sequencing
of EndoC_BH1
Homo sapiens
EndoC_BH1
Lab:
Kyle Gaulton, UCSD
Project:
T1D
Experiment
DSR351ZKB
released
CRISPR genome editing followed by DNA sequencing
of EndoC_BH1
Homo sapiens
EndoC_BH1
Lab:
Kyle Gaulton, UCSD
Project:
T1D
Experiment
DSR983MYO
released
snDrop-seq
of kidney (medulla)
Homo sapiens
kidney male adult
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR718NCQ
released
snDrop-seq
of kidney (Cortex-Medulla)
Homo sapiens
kidney male adult
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR684WPX
released
snDrop-seq
of kidney (cortex)
Homo sapiens
kidney NONE and female adult and male adult
Lab:
AMP-T2D consortium
Project:
AMP