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Citing CMDGA
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Assay category
6
3D chromatin structure
Assay
1037
total RNA-seq
906
ChIP-seq
260
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
small RNA-seq
11
RRBS
6
Hi-C
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Project
6
AMP
RFA
4
AMP
2
AMP2
Experiment status
6
released
Genome assembly (visualization)
2
hg19
Organism
6
Homo sapiens
Biosample type
6
primary cell
6
tissue
2
cell line
Organ
4
limb
4
musculature of body
1
kidney
1
pancreas
Life stage
6
adult
Available data
11
hic
bedpe bed3+
1
bedpe
Library made from
6
DNA
Date released
4
July, 2019
1
August, 2021
1
March, 2019
Lab
4
AMP-T2D consortium
1
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Replication type
5
unreplicated
1
anisogenic
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bedpe bed3+
Showing 6 of 6 results
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Experiment
DSR145PQU
released
Hi-C
of kidney
Homo sapiens
kidney female adult (63 years)
Lab:
Katalin Susztak, Upenn
Project:
AMP
Experiment
DSR998CGE
released
Hi-C
of gastrocnemius medialis
Homo sapiens
gastrocnemius medialis male adult (54 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR851SPB
released
Hi-C
of gastrocnemius medialis
Homo sapiens
gastrocnemius medialis female adult (51 year)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR920BPY
released
Hi-C
of gastrocnemius medialis
Homo sapiens
gastrocnemius medialis female adult (53 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR163ZFS
released
Hi-C
of gastrocnemius medialis
Homo sapiens
gastrocnemius medialis male adult (37 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR043623
released
Hi-C
of islet of Langerhans
Homo sapiens
islet of Langerhans female adult (56 years) and female adult (59 years) and male adult (53 years)
Lab:
Bing Ren, UCSD
Project:
AMP