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Citing CMDGA
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Assay category
3
3D chromatin structure
1
DNA sequencing
Assay
106
single cell RNA-seq
76
ATAC-seq
74
total RNA-seq
43
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Project
4
AMP
RFA
4
AMP2
Experiment status
4
released
Genome assembly (visualization)
2
hg19
Organism
4
Homo sapiens
Biosample type
2
cell line
2
tissue
Organ
2
liver
1
kidney
1
pancreas
Life stage
2
adult
2
unknown
Available data
2
bedpe bed3+
2
hic
1
vcf
Library made from
4
DNA
Date released
10
March, 2020
8
July, 2019
5
October, 2019
4
August, 2021
3
October, 2022
2
November, 2019
1
December, 2018
1
March, 2019
1
March, 2023
Lab
3
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Replication type
3
unreplicated
1
anisogenic
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Experiment
DSR246XUG
released
whole genome sequencing assay
of HepG2
Homo sapiens
HepG2
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR744JJN
released
Hi-C
of HepG2
Homo sapiens
HepG2
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR942HZR
released
Hi-C
of islet of Langerhans
Homo sapiens
islet of Langerhans female adult (56 years) and female adult (59 years) and male adult (53 years)
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR145PQU
released
Hi-C
of kidney
Homo sapiens
kidney female adult (63 years)
Lab:
Katalin Susztak, Upenn
Project:
AMP