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Citing CMDGA
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Assay category
6
DNA binding
Assay
6
ChIP-seq
Project
6
AMP
RFA
6
AMP
Experiment status
6
released
Genome assembly (visualization)
5
GRCh38
5
hg19
Organism
6
Homo sapiens
Target of assay
3
transcription factor
2
RNA binding protein
2
histone
2
histone modification
1
broad histone mark
1
control
1
narrow histone mark
Biosample type
6
tissue
Organ
3
liver
3
pancreas
Life stage
3
adult
3
child
3
unknown
Available data
6
bam
6
fastq
5
bigWig
3
bed bed3+
2
bed narrowPeak
2
bigBed narrowPeak
Platform
38
Illumina HiSeq 2000
36
Illumina NextSeq 500
27
Illumina HiSeq 2500
13
Illumina Genome Analyzer
6
Illumina Genome Analyzer IIx
4
HiSeq 1500
4
Illumina Genome Analyzer II
1
Illumina Genome Analyzer I
1
Illumina HiSeq 4000
Run type
6
single-ended
Read length (nt)
4
36
3
51
Library made from
6
DNA
Date released
3
August, 2017
3
December, 2017
Lab
6
AMP-T2D consortium
Replication type
77
isogenic
59
unreplicated
6
anisogenic
Audit category:
3
missing controlled_by
files.file_type!
vcf
Showing 6 of 6 results
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Experiment
TSTSR981226
released
ChIP-seq
of liver
Homo sapiens
liver female child (6 years) and male adult (32 years)
Target:
RAD21
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR296175
released
ChIP-seq
of liver
Homo sapiens
liver female child (6 years) and male adult (32 years)
Target:
CTCF
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR485515
released
ChIP-seq
of liver
Homo sapiens
liver female child (6 years) and male adult (32 years)
Target:
rabbit-IgG-control
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR760577
released
Audit not_compliant
1
ChIP-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans male (38 years) and male (62 years) and male (63 years)
Target:
H2AFZ
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR352275
released
Audit not_compliant
1
ChIP-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans male (38 years) and male (59 years) and male (70 years)
Target:
H3K4me1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR774103
released
Audit not_compliant
1
ChIP-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans male (38 years) and male (62 years) and male (63 years)
Target:
CTCF
Lab:
AMP-T2D consortium
Project:
AMP