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Citing CMDGA
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Assay category
6
DNA accessibility
Assay
206
DNase-seq
167
ChIP-seq
6
ATAC-seq
5
Hi-C
2
Capture-C
2
pCHi-C
2
total RNA-seq
1
snATAC-seq
Project
6
AMP
RFA
5
AMP
1
AMP2
Experiment status
5
released
1
archived
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
4
in vitro differentiated cells
2
tissue
Organ
4
connective tissue
2
pancreas
Life stage
4
unknown
2
adult
Available data
278
bed narrowPeak
175
bam
136
bigWig
64
xls
61
fastq
39
zippedFastqFolder
27
bigBed narrowPeak
14
tsv
12
bed bed3
7
bed bedgraph
4
bed bed3+
3
txt
2
bed broadPeak
Platform
1
Illumina HiSeq 2000
1
Illumina HiSeq 2500
Run type
2
paired-ended
Read length (nt)
1
50
1
125
Library made from
6
DNA
Date released
4
February, 2023
1
March, 2019
1
October, 2017
Lab
4
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Replication type
5
anisogenic
1
unreplicated
Audit category:
2
inconsistent ontology term
Showing 6 of 6 results
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Experiment
DSR657VBF
released
ATAC-seq
of adipocyte
Homo sapiens
adipocyte
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR864VPS
released
Audit error
1
ATAC-seq
of immature adipocyte
Homo sapiens
immature adipocyte
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR581RWT
released
Audit error
1
ATAC-seq
of immature adipocyte
Homo sapiens
immature adipocyte
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR533BQP
released
ATAC-seq
of preadipocyte
Homo sapiens
preadipocyte
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR955785
archived
ATAC-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans female adult (52 years) and female adult (57 years) and male adult (53 years) and male adult (54 years) and male adult (59 years)
Lab:
Mark McCarthy, Oxford
Project:
AMP
Experiment
TSTSR140792
released
ATAC-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans female adult (41 year) and male adult (59 years)
Lab:
Stephen Parker, UMich
Project:
AMP