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Citing CMDGA
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Assay category
7
3D chromatin structure
Assay
7
Hi-C
Project
7
AMP
RFA
6
AMP
1
AMP2
Experiment status
7
released
Genome assembly (visualization)
7
hg19
Organism
7
Homo sapiens
Biosample type
2
cell line
2
in vitro differentiated cells
2
tissue
1
primary cell
Organ
2
epithelium
1
blood vessel
1
heart
1
liver
1
musculature of body
1
pancreas
1
vasculature
1
vein
Life stage
adult
4
unknown
2
embryonic
1
child
Available data
1478
bam
1351
bigWig
908
bed narrowPeak
756
fastq
605
bigBed narrowPeak
540
tsv
253
bed broadPeak
243
bigBed broadPeak
226
bed bed3+
131
tagAlign
17
bed bedMethyl
17
bigBed bedMethyl
17
zippedFastqFolder
14
txt
10
bed bed3
8
hic
7
bedpe bed3+
5
csv
4
hdf5
4
tar
3
bed bedgraph
1
vcf
Read length (nt)
1
69
Library made from
7
DNA
Date released
3
October, 2019
2
March, 2020
1
August, 2021
1
November, 2019
Lab
6
AMP-T2D consortium
1
Bing Ren, UCSD
Replication type
3
unreplicated
2
anisogenic
2
isogenic
Audit category:
3
inconsistent ontology term
files.read_length!
69
replicates.library.biosample.life_stage!
adult
Showing 7 of 7 results
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Experiment
DSR744JJN
released
Hi-C
of HepG2
Homo sapiens
HepG2
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR656CHU
released
Hi-C
of psoas muscle
Homo sapiens
psoas muscle male child (3 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR430XOJ
released
Hi-C
of endothelial cell of umbilical vein
Homo sapiens
endothelial cell of umbilical vein
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR786VPZ
released
Hi-C
of heart
Homo sapiens
heart embryo (57 days) and embryo (67 days)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR464RKE
released
Audit error
1
Hi-C
of cardiac precursors (cardiac muscle cell)
Homo sapiens
cardiac precursors (cardiac muscle cell)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR235SPD
released
Audit error
1
Hi-C
of cardiomyocytes (cardiac muscle cell)
Homo sapiens
cardiomyocytes (cardiac muscle cell)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR433ZII
released
Audit error
1
Hi-C
of EndoC_BH1
Homo sapiens
EndoC_BH1
Lab:
AMP-T2D consortium
Project:
AMP