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Schema
Citing CMDGA
Clear Filters
Assay category
4
DNA binding
1
DNA accessibility
Assay
4
ChIP-seq
1
DNase-seq
Project
5
AMP
RFA
5
AMP
Experiment status
5
released
Genome assembly (visualization)
5
hg19
3
GRCh38
Organism
5
Homo sapiens
Target of assay
3
RNA binding protein
3
transcription factor
1
broad histone mark
1
histone
1
histone modification
Biosample type
3
primary cell
2
cell line
Organ
2
brain
2
epithelium
2
liver
2
vasculature
1
blood vessel
Life stage
3
unknown
2
child
Available data
26
fastq
25
bam
18
bigWig
17
bed narrowPeak
8
bigBed narrowPeak
7
bed broadPeak
5
bigBed broadPeak
5
tagAlign
4
bed bed3+
Platform
53
Illumina Genome Analyzer IIx
15
Illumina Genome Analyzer IIe
10
Illumina HiSeq 2000
8
Illumina Genome Analyzer
6
Illumina HiSeq 4000
5
Illumina Genome Analyzer II
4
Illumina NextSeq 500
2
Illumina HiSeq 2500
1
Illumina Genome Analyzer I
Run type
5
single-ended
1
paired-ended
Read length (nt)
5
36
1
101
Library made from
5
DNA
Date released
4
November, 2017
1
August, 2017
Lab
5
AMP-T2D consortium
Replication type
5
isogenic
Audit category:
1
inconsistent control read length
Showing 5 of 5 results
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Experiment
TSTSR411985
released
ChIP-seq
of choroid plexus epithelial cell
Homo sapiens
choroid plexus epithelial cell
Target:
CTCF
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR492951
released
ChIP-seq
of brain microvascular endothelial cell
Homo sapiens
brain microvascular endothelial cell
Target:
CTCF
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR762932
released
Audit warning
1
ChIP-seq
of HepG2
Homo sapiens
HepG2
Target:
H3K27me3
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR271600
released
ChIP-seq
of HepG2
Homo sapiens
HepG2
Target:
CTCF
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR251267
released
DNase-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast
Lab:
AMP-T2D consortium
Project:
AMP