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Citing CMDGA
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Assay category
6
DNA accessibility
1
DNA binding
Assay
3
ATAC-seq
2
DNase-seq
1
ChIP-seq
1
FAIRE-seq
Project
7
AMP
RFA
7
AMP
Experiment status
7
released
Genome assembly (visualization)
63
hg19
GRCh38
Organism
7
Homo sapiens
Target of assay
1
RNA binding protein
1
transcription factor
Biosample type
3
primary cell
2
in vitro differentiated cells
2
tissue
Organ
3
connective tissue
1
adipose tissue
1
pancreas
Life stage
32
child
7
unknown
3
adult
1
embryonic
1
newborn
Available data
96
bam
57
bigWig
50
fastq
46
tsv
44
tagAlign
38
bed narrowPeak
11
bed bed3+
11
bed bedMethyl
11
bigBed bedMethyl
7
bigBed narrowPeak
5
bed bed3
5
bedpe bed3+
5
hic
4
hdf5
4
txt
3
bed bedgraph
3
bed broadPeak
2
bigBed broadPeak
1
vcf
Platform
1
Illumina Genome Analyzer I
1
Illumina Genome Analyzer II
1
Illumina Genome Analyzer IIe
1
Illumina Genome Analyzer IIx
1
Illumina HiSeq 2000
Run type
3
single-ended
1
paired-ended
Read length (nt)
2
36
1
35
1
101
Library made from
7
DNA
Date released
4
August, 2017
3
October, 2019
Lab
7
AMP-T2D consortium
Replication type
3
anisogenic
3
isogenic
1
unreplicated
assembly!
GRCh38
Showing 7 of 7 results
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Experiment
DSR851WOP
released
ATAC-seq
of adipocyte
Homo sapiens
adipocyte
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR638AUV
released
ATAC-seq
of adipocyte
Homo sapiens
adipocyte
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR543YBS
released
ATAC-seq
of adipose tissue
Homo sapiens
adipose tissue
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR251267
released
DNase-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR986440
released
DNase-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR121227
released
FAIRE-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans male (53 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR132965
released
ChIP-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast male (22 years)
Target:
CTCF
Lab:
AMP-T2D consortium
Project:
AMP