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Schema
Citing CMDGA
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Assay category
6
3D chromatin structure
Assay
1508
ChIP-seq
1382
total RNA-seq
209
DNase-seq
155
ATAC-seq
136
single cell RNA-seq
27
snATAC-seq
25
WGBS
18
small RNA-seq
6
Hi-C
5
FAIRE-seq
5
GRO-seq
4
RRBS
1
pCHi-C
Project
6
AMP
RFA
6
AMP
Experiment status
6
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
4
primary cell
2
cell line
Organ
3
brain
2
blood vessel
2
epithelium
2
liver
2
vasculature
1
connective tissue
1
pancreas
Life stage
4
unknown
1
adult
1
child
Available data
23
hic
20
bedpe bed3+
5
bed bed3+
5
bigWig
5
hdf5
3
cool
1
bedpe
1
fastq
Platform
1
Illumina HiSeq 2000
Run type
1
paired-ended
Read length (nt)
1
50
Library made from
6
DNA
Date released
4
July, 2019
1
December, 2018
1
October, 2019
Lab
6
AMP-T2D consortium
Replication type
6
isogenic
Audit category:
1
inconsistent assembly
Showing 6 of 6 results
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Experiment
DSR617LKP
released
Audit warning
1
Hi-C
of Panc1
Homo sapiens
Panc1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR770TGA
released
Hi-C
of brain pericyte
Homo sapiens
brain pericyte
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR270TQF
released
Hi-C
of astrocyte of the cerebellum
Homo sapiens
astrocyte of the cerebellum
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR933OWU
released
Hi-C
of endothelial cell of hepatic sinusoid
Homo sapiens
endothelial cell of hepatic sinusoid
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR240JNB
released
Hi-C
of brain microvascular endothelial cell
Homo sapiens
brain microvascular endothelial cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR542TGF
released
Hi-C
of HepG2
Homo sapiens
HepG2
Lab:
AMP-T2D consortium
Project:
AMP