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Citing CMDGA
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Assay category
6
DNA binding
Assay
6
ChIP-seq
2
total RNA-seq
1
GRO-seq
Project
6
AMP
RFA
6
AMP
Experiment status
6
released
Genome assembly (visualization)
5
GRCh38
5
hg19
Organism
6
Homo sapiens
Target of assay
4
histone
4
histone modification
2
broad histone mark
2
control
narrow histone mark
2
transcription factor
Biosample type
6
in vitro differentiated cells
Life stage
4
unknown
2
embryonic
Available data
6
bam
6
fastq
4
bed narrowPeak
4
bigWig
2
bed bed3+
Platform
4
Illumina HiSeq 2500
2
Illumina Genome Analyzer IIx
Run type
6
single-ended
Read length (nt)
5
36
2
50
Library made from
6
DNA
Date released
4
December, 2017
2
February, 2018
Lab
6
AMP-T2D consortium
Replication type
4
unreplicated
2
isogenic
Audit category:
2
inconsistent control read length
target.investigated_as!
narrow histone mark
Showing 6 of 6 results
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Experiment
TSTSR321198
released
ChIP-seq
of primitive gut cell
Homo sapiens
primitive gut cell
Target:
H3K27me3
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR993192
released
ChIP-seq
of primitive gut cell
Homo sapiens
primitive gut cell
Target:
Control
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR320739
released
Audit warning
1
ChIP-seq
of primitive gut cell
Homo sapiens
primitive gut cell
Target:
H3K4me1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR345029
released
Audit warning
1
ChIP-seq
of primitive gut cell
Homo sapiens
primitive gut cell
Target:
FOXA2
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR627964
released
ChIP-seq
of primitive gut cell
Homo sapiens
primitive gut cell
Target:
FOXA1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR648832
released
ChIP-seq
of primitive gut cell
Homo sapiens
primitive gut cell
Target:
Control
Lab:
AMP-T2D consortium
Project:
AMP