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Schema
Citing CMDGA
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Assay category
5
DNA methylation
1
DNA binding
Assay
5
WGBS
1
ChIP-seq
Project
6
AMP
RFA
6
AMP
Experiment status
6
released
Genome assembly (visualization)
6
GRCh38
3
hg19
Organism
6
Homo sapiens
Target of assay
1
histone
1
histone modification
1
narrow histone mark
Biosample type
4
tissue
2
cell line
Organ
2
liver
2
pancreas
2
spleen
Life stage
4
adult
2
child
Available data
6
bam
6
bigWig
6
fastq
5
bed bedMethyl
5
bigBed bedMethyl
1
bed broadPeak
1
bed narrowPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Platform
477
Illumina HiSeq 2000
158
Illumina HiSeq 2500
97
Illumina Genome Analyzer IIx
73
Illumina Genome Analyzer
71
Illumina HiSeq 4000
60
Illumina NextSeq 500
15
Illumina Genome Analyzer II
14
Illumina Genome Analyzer IIe
6
HiSeq 1500
6
MiSeq
5
Illumina HiSeq X Ten
1
Applied Biosystems SOLiD System 3 Plus
1
Illumina Genome Analyzer I
Run type
5
paired-ended
1
single-ended
Read length (nt)
5
151
1
36
Library made from
6
DNA
Date released
5
November, 2018
1
November, 2017
Lab
6
AMP-T2D consortium
Replication type
4
unreplicated
2
isogenic
Showing 6 of 6 results
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Experiment
TSTSR496DZA
released
WGBS
of HepG2
Homo sapiens
HepG2
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR478JMV
released
WGBS
of spleen
Homo sapiens
spleen male adult (37 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR197AYP
released
WGBS
of spleen
Homo sapiens
spleen female adult (51 year)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR950TQA
released
WGBS
of body of pancreas
Homo sapiens
body of pancreas male adult (37 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR820HBA
released
WGBS
of body of pancreas
Homo sapiens
body of pancreas male adult (54 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR580557
released
ChIP-seq
of HepG2
Homo sapiens
HepG2
Target:
H3K4me3
Lab:
AMP-T2D consortium
Project:
AMP