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Schema
Citing CMDGA
Clear Filters
Assay category
3
DNA binding
Assay
3
ChIP-seq
Project
3
AMP
RFA
3
AMP
Experiment status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Target of assay
histone
13
histone modification
8
narrow histone mark
5
broad histone mark
2
RNA binding protein
2
transcription factor
1
control
Biosample type
2
cell line
1
primary cell
Organ
2
liver
Life stage
2
child
1
unknown
Available data
3
bam
3
bigWig
3
fastq
2
bed broadPeak
2
bed narrowPeak
2
bigBed broadPeak
2
bigBed narrowPeak
1
tagAlign
Platform
493
Illumina HiSeq 2000
218
Illumina NovaSeq 6000
152
Illumina HiSeq 4000
131
Illumina HiSeq 2500
95
Illumina Genome Analyzer IIx
68
Illumina Genome Analyzer
60
Illumina NextSeq 500
38
HiSeq HighOutput V4
17
Illumina Genome Analyzer II
8
HiSeq 1500
5
Illumina HiSeq X Ten
3
Illumina Genome Analyzer IIe
3
MiSeq
2
Applied Biosystems SOLiD System 3 Plus
2
Illumina Genome Analyzer I
Run type
3
single-ended
Read length (nt)
3
36
Library made from
3
DNA
Date released
2
November, 2017
1
August, 2017
Lab
3
AMP-T2D consortium
Replication type
3
isogenic
Audit category:
1
inconsistent control read length
target.investigated_as!
histone
Showing 3 of 3 results
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Experiment
TSTSR310667
released
Audit warning
1
ChIP-seq
of HepG2
Homo sapiens
HepG2
Target:
CTCF
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR097481
released
ChIP-seq
of HepG2
Homo sapiens
HepG2
Target:
Control
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR132965
released
ChIP-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast male (22 years)
Target:
CTCF
Lab:
AMP-T2D consortium
Project:
AMP