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Citing CMDGA
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Assay category
5
3D chromatin structure
Assay
286
total RNA-seq
188
ATAC-seq
172
ChIP-seq
152
single cell RNA-seq
55
snATAC-seq
47
WGBS
17
pCHi-C
10
MeRIP-seq
5
Hi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
4
AMP
1
ITG
RFA
4
AMP2
1
ITG
Experiment status
5
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
3
tissue
1
cell line
1
primary cell
Organ
2
pancreas
1
kidney
1
liver
Life stage
4
adult
1
unknown
Available data
4
hic
2
bedpe bed3+
1
bedpe
Library made from
5
DNA
Date released
3
August, 2021
1
March, 2019
1
March, 2023
Lab
AMP-T2D consortium
3
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Replication type
3
anisogenic
2
unreplicated
Audit category:
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AMP-T2D consortium
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Showing 5 of 5 results
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Experiment
DSR798SDK
released
Hi-C
of chondrocytes
Homo sapiens
chondrocytes female adult (58 years) and female adult (63 years) and female adult (65 years) and female adult (73 years) and female adult (75 years) and male adult (61 year) and male adult (72 years) and male adult (75 years)
Lab:
ITG
Project:
ITG
Experiment
DSR744JJN
released
Hi-C
of HepG2
Homo sapiens
HepG2
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR942HZR
released
Hi-C
of islet of Langerhans
Homo sapiens
islet of Langerhans female adult (56 years) and female adult (59 years) and male adult (53 years)
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR145PQU
released
Hi-C
of kidney
Homo sapiens
kidney female adult (63 years)
Lab:
Katalin Susztak, Upenn
Project:
AMP
Experiment
TSTSR043623
released
Hi-C
of islet of Langerhans
Homo sapiens
islet of Langerhans female adult (56 years) and female adult (59 years) and male adult (53 years)
Lab:
Bing Ren, UCSD
Project:
AMP