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Citing CMDGA
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Assay category
3
3D chromatin structure
1
Transcription
Assay
220
total RNA-seq
212
ChIP-seq
152
single cell RNA-seq
105
ATAC-seq
72
snATAC-seq
17
pCHi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
2
AMP
1
ITG
1
community
RFA
2
AMP2
1
ITG
1
community
Experiment status
4
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
2
cell line
1
primary cell
1
tissue
Organ
pancreas
3
epithelium
1
kidney
1
liver
Life stage
2
adult
1
unknown
Available data
3
hic
1
bedpe bed3+
Library made from
3
DNA
Date released
2
August, 2021
2
March, 2023
Lab
AMP-T2D consortium
1
Anna Gloyn, Oxford
1
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Replication type
3
unreplicated
1
anisogenic
lab.title!
AMP-T2D consortium
organ_slims!
pancreas
Showing 4 of 4 results
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Experiment
DSR798SDK
released
Hi-C
of chondrocytes
Homo sapiens
chondrocytes female adult (58 years) and female adult (63 years) and female adult (65 years) and female adult (73 years) and female adult (75 years) and male adult (61 year) and male adult (72 years) and male adult (75 years)
Lab:
ITG
Project:
ITG
Experiment
DSR032JSO
released
siRNA RNA-seq
of EndoC-BH1
Lab:
Anna Gloyn, Oxford
Project:
community
Experiment
DSR744JJN
released
Hi-C
of HepG2
Homo sapiens
HepG2
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR145PQU
released
Hi-C
of kidney
Homo sapiens
kidney female adult (63 years)
Lab:
Katalin Susztak, Upenn
Project:
AMP